2022

• ZEMEK, M; SALPLACHTA, J; ZIKMUND, T; OMOTE, K; TAKEDA, Y; OBERTA, P; KAISER, J
  Automatic marker-free estimation methods for the axis of rotation in sub-micron X-ray computed tomography

• PINTO, R; MATULA, J; Gomez-Lazaro, M; SOUSA, M; LOBO, A; ZIKMUND, T; KAISER, J; GOMES, J. High-resolution micro-CT for 3D infarct characterization and segmentation in mice stroke models

• SLAMECKA, K; KASHIMBETOVA, A; POKLUDA, J; ZIKMUND, T; KAISER, J; MONTUFAR, E. B; CELKO, L Fatigue behaviour of titanium scaffolds with hierarchical porosity produced by material extrusion additive manufacturing

• JAQUES, V. A. J; ZIKMUNDOVA, E; HOLAS, J; ZIKMUND, T; KAISER, J; & HOLCOVA, K Cyclododecane shaping, sublimation rate and residue analysis for the extraction of painting micro-samples from resin cross-sections

• JAQUES, V. A. J; ZIKMUNDOVA, E; HOLAS, J; ZIKMUND, T; KAISER, J; & HOLCOVA, K Conductive cross-section preparation of non-conductive painting micro-samples for SEM analysis

• HANKEOVA, S; VAN HUL, N; LAZNOVSKY, J; VERBOVEN, E; MANGOLD, K; HENSENS, N; ADORI, C; VERHOEF, E; ZIKMUND, T; DAWIT, F; KAVKOVA, M Sex differences and risk factors for bleeding in Alagille syndrome
  

• GAMBLE, J. F; TOBYN, M; ZHANG, S; ZHU, A; ŠALPLACHTA, J; MATULA, J; ZIKMUND, T; KAISER, J; OBERTA, P "Characterization of the Morphological Nature of Hollow Spray Dried Dispersion Particles Using X-ray Submicron-Computed Tomography." AAPS PharmSciTech, (2022): 23(1), 1-7.

• GAJDOSOVA, V; STRACHOTA, B; STRACHOTA, A; MICHALKOVA, D; KREJCIKOVA, S; FULIN, P; NYC, O; BRINEK, A; ZEMEK, M; SLOUF, M "Biodegradable Thermoplastic Starch/Polycaprolactone Blends with Co-Continuous Morphology Suitable for Local Release of Antibiotics." Materials (2022), 15, 1101.

• KAVKOVÁ, M; ŠULCOVÁ, M; ZIKMUND, T; PYSZKO, M; KAISER, J; BUCHTOVÁ, M "X-ray microtomography imaging of craniofacial hard tissues in selected reptile species with different types of dentition." GigaScience Database (2022)

• VRÁNA, R; KOUTECKÝ, T; ČERVINEK, O; ZIKMUND, T; PANTĚLEJEV, L; KAISER, J; KOUTNÝ, D "Deviations of the SLM Produced Lattice Structures and Their Influence on Mechanical Properties." Materials (2022), 15, 3144.

• PINTO, R; MATULA, J; GOMEZ-LAZARO, M; SOUSA, M; ZIKMUND, T; KAISER, J; GOMES, J. R "High resolution micro-CT imaging in mice stroke models: from 3D detailed infarct characterization to automatic area segmentation." bioRxiv 2022.02.02.478782

• LAZNOVSKY, J; BRINEK, A; ZIKMUND, T; BOUDOVA, M; VOJTOVA, L; DORAZILOVA, J; TRUNEC, M; STASTNY, P; KRTICKA, M; PLANKA, L; IRA, D; FALDYNA, M; KAISER, J "Automatic 3D analysis of the ex-vivo porcine lumbar interbody fusion based on X-ray micro computed tomography data" Computers in Biology and Medicine, Volume 145, 2022, 105438

• BOUDERLIQUE, T; PETERSEN, J; FAURE, L; ABED-NAVANDI, D; BOUCHNITA, A; MUELLER, B; NAZAROV, M; ENGLMAIER, L; TESAROVA, M; FRADE, P. R; ZIKMUND, T; KOEHNE, T; KAISER, J; FRIED, K; WILD, C; PANTOS, O; HELLANDER, A; BYTHELL, J; ADAMEYKO, I "Surface flow for colonial integration in reef-building corals" Current Biology, Volume 32, Issue 12, 2022, Pages 2596-2609.e7

• MATULA, J; POLAKOVA, V; SALPLACHTA J; TESAROVA, M; ZIKMUND, T; KAUCKA, M; ADAMEYKO, I; KAISER, J "Resolving complex cartilage structures in developmental biology via deep learning-based automatic segmentation of X-ray computed microtomography images." Sci Rep 12, 8728 (2022).

• KAMENEVA, P; MELNIKOVA, V. I; KASTRITI, M. E; KURTOVA, A; KRYUKOV, E; MURTAZINA, A; FAURE, L; POVERENNAYA, I; ARTEMOV; A. V; KALININA, T. S; KUDRYASHOV, N. V; BADER, M; SKODA, J; CHLAPEK, P; CURYLOVA, L; SOURADA, L; NERADIL, J; TESAROVA, M; PASQUALETTI, M; GASPAR, P; YAKUSHOV, V. D; SHEFTEL, B. I; ZIKMUND, T; KAISER, J; FRIED, K; ALENINA, N; VORONEZHSKAYA, E. E; ADAMEYKO, I "Serotonin limits generation of chromaffin cells during adrenal organ development." Nature Communications 13, 2901 (2022).

• TESAŘOVÁ, M; MANCINI, L; MAURI, E; ALJANČIČ, G; NĂPĂRUŞ-ALJANČIČ, M; KONSTANJŠEK, R; MALI, L. B; ZIKMUND, T; KAUCKÁ, M; PAPI, F; GOYENS, J; BOUCHNITA, A; HELLANDER, A; ADAMEYKO, I; KAISER, J "Living in darkness: Exploring adaptation of Proteus anguinus in 3 dimensions by X-ray imaging." GigaScience, Volume 11, 2022, giac030

• BLAZEK, P; WESTENBERGER, P; ERKER, S; BRINEK, A; ZIKMUND, T; RETTENWANDER, D; WAGNER, N. P; KECKES, J; KAISER, J; KAZDA, T; VYROUBAL, P; MACAK, M; TODT, J "Axially and radially inhomogeneous swelling in commercial 18650 Li-ion battery cells." Journal of Energy Storage, Volume 52, Part B, 2022, 104563

2021

• CASTALDO, R; AVOLIO, R; COCCA, M; ERRICO, M. E; LAVORGNA, M; ŠALPLACHTA, J; SANTILLO, CH; GENTILE, G "Hierarchically porous hydrogels and aerogels based on reduced graphene oxide, montmorillonite and hyper-crosslinked resins for water and air remediation." Chemical Engineering Journal (2021): 133162. 

• BLAŽEK, P; GURICOVA, P; KLVAC, O; BRINEK, A; KAZDA, T; ZELENKA, F; ZIKMUND, T; KAISER, J. "Multiscale 3D Analysis of Defects and Temporal Development of Electrode Morphology in Lithium-Ion Batteries By X-Ray Computed Tomography." ECS Transactions, (2021): 105(1), 69.

• JEKL, V; BRINEK, A; ZIKMUND, T; JEKLOVA, E; KAISER, J "Use of Micro-CT Imaging to Assess Ventral Mandibular Cortical Thickness and Volume in an Experimental Rodent Model With Chronic High-Phosphorus Intake." Frontiers in Veterinary Science, (2021): 8.

• JAQUES, V. A; DU PLESSIS, A; ZEMEK, M; SALPLACHTA, J; STUBIANOVA, Z; ZIKMUND, T; KAISER, J. "Review of porosity uncertainty estimation methods in computed tomography dataset." Measurement Science and Technology (2021): 32(12), 122001.

• HANKEOVA, S; SALPLACHTA, J; VAN HUL, N; KAVKOVA, M; IQBAL, A; ZIKMUND, T; KAISER, J; ANDERSSON, E. R. "DUCT: Double Resin Casting followed by Micro-Computed Tomography for 3D Liver Analysis. " Journal of Visualized Experiments: Jove (2021): (175).

• HRUBA, E; KAVKOVA, M; DALECKA, L; MACHOLAN, M; ZIKMUND, T; VARECHA, M; BOSAKOVA, M; KAISER, J; KREJCI, P; HOVORAKOVA, M; BUCHTOVA, M. "Loss of Sprouty produces a ciliopathic skeletal phenotype in mice through upregulation of Hedgehog signaling. " Journal of Bone and Mineral Research (2021).

• ČELKO, L; GUTIÉRREZ-CANO, V; CASAS-LUNA, M; MATULA, J; OLIVER-URRUTIA, C; REMEŠOVÁ, M; DVOŘÁK, K; ZIKMUND, T; KAISER, J; MONTUFAR, E. B. "Characterization of porosity and hollow defects in ceramic objects built by extrusion additive manufacturing." Additive Manufacturing (2021): 47, 102272.

• KAUCKA, M; SZAROWSKA, B; KAVKOVA, M; KASTRITI, M. E; KAMENEVA, P; SCHMIDT, I; PESKOVA, L; ARAUS, J; SIMON, A; KAISER, J;  ADAMEYKO, I. "Nerve-associated Schwann cell precursors contribute extracutaneous melanocytes to the heart, inner ear, supraorbital locations and brain meninges." Cellular and Molecular Life Sciences (2021): 78(16), 6033-6049.

• KRTICKA, M; PLANKA, L; VOJTOVA, L; NEKUDA, V; STASTNY, P; SEDLACEK, R; BRINEK, A; KAVKOVA, M; GOPFERT, E; HEDVICAKOVA, V; RAMPICHOVA, M; KREN, L; LISKOVA, K; IRA, D; DORAZILOVA, J; SUCHY, T; ZIKMUND, T; KAISER, J; STARY, D; FALDYNA, M; TRUNEC, M "Lumbar Interbody Fusion Conducted on a Porcine Model with a Bioresorbable Ceramic/Biopolymer Hybrid Implant Enriched with Hyperstable Fibroblast Growth Factor 2. " Biomedicines (2021): 9(7), 733.

• MIKYSEK, P; ZIKMUND, T; DOSBABA, M; BŘÍNEK, A; SLOBODNÍK, M; ADAMOVIČ, J; MÉSZÁROSOVÁ, N; TROJEK, T; KAISER, J "Multi-scale visualization of uranium-rich domains dispersed in U-Zr mineralization of sandstone-type (Břevniště, Czech Republic). " Ore Geology Reviews (2021): 104358

• KIMURA, T; BOSAKOVA, M; NONAKA, Y; HRUBA, E; YASUDA, K; FUTAKAWA, S; KUBOTA , T; FAFILEK,B; TOMAS GREGOR, T; ABRAHAM, S; GOMOLKOVA, R; BELASKOVA, S; PESL, M; CSUKASI, F; DURAN, I; FUJIWARA, M; KAVKOVA, M; ZIKMUND, T; KAISER, J; BUCHTOVA, M; KRAKOW, D; NAKAMURA, Y; OZONO, K & KREJCI, P "An RNA aptamer restores defective bone growth in FGFR3-related skeletal dysplasia in mice." Science Translational Medicine (2021): 13(592). 

• MATULA, J; TESAROVA, M; ZIKMUND, T; KAUCKA, M; ADAMEYKO, I & KAISER, J "X-ray microtomography–based atlas of mouse cranial development." GigaScience (2021): 10(3), giab012.

• KRTIČKA, M; MICHLOVSKÁ, L; NEKUDA, V; POLÁČEK, P; VALOVÁ, K; ŽÍDEK, J; KAISER,  J; ZIKMUND, T; VOJTOVÁ, L "Ex-vivo biomechanical testing of pig femur diaphysis B type fracture fixed by novel biodegradable bone glue. " Journal of the mechanical behavior of biomedical materials (2021): 115, 104249.

• MARCIÁN, P; BORÁK, L; ZIKMUND, T; HORÁČKOVÁ, L; KAISER, J; JOUKAL, M; WOLFF, J  "On the limits of finite element models created from (micro) CT datasets and used in studies of bone-implant-related biomechanical problems." Journal of the Mechanical Behavior of Biomedical Materials (2021): 104393. 

• HANKEOVA, S; SALPLACHTA, J; ZIKMUND, T; KAVKOVA, M; VAN HUL, N; BRINEK, A; SMEKALOVA, V; LAZNOVSKY, J; DAWIT, F; JAROS, J; BRYJA, V; LENDAHL, U; ELLIS, E; NEMETH, A; FISHER, B; HANNEZO, E; KAISER, J; ANDERSSON, ER "DUCT reveals architectural mechanisms contributing to bile duct recovery in a mouse model for Alagille syndrome." Elife 10 (2021): e60916. 

• KAVKOVA, M; ZIKMUND, T; KALA, A; SALPLACHTA, J; PROSKAUER PENA, SL; KAISER, J; JEZEK, K "Contrast enhanced X-ray computed tomography imaging of amyloid plaques in Alzheimer disease rat model on lab based micro CT system. " Sci Rep 11 (2021): 5999. ​

• SALPLACHTA, J; ZIKMUND, T; ZEMEK, M; BRINEK, A; TAKEDA, Y; OMOTE, K; KAISER, J. "Complete Ring Artifacts Reduction Procedure for Lab-Based X-ray Nano CT Systems." Sensors 21.1 (2021): 238.

• OLIVER-URRUTIA, C; IBANEZ, RR; FLORES-MERINO, MV; VOJTOVA, L; SALPLACHTA, J; CELKO, L; KAISER, J; MONTUFAR, EB. "Lyophilized Polyvinylpyrrolidone Hydrogel for Culture of Human Oral Mucosa Stem Cells." Materials 14.1 (2021): 227.

    2020

• KAVKOVA, M., SULCOVA, M; DUMKOVA, J; ZAHRADNICEK, O; KAISER, J; TUCKER, AS; ZIKMUND, T; BUCHTOVA, M.  "Coordinated labio-lingual asymmetries in dental and bone development create a symmetrical acrodont dentition." Scientific reports 10.1 (2020): 1-16.

• KUNISHIMA, N.; TAKEDA, Y.; HIROSE, R.; KALASOVA, D.; SALPLACHTA, J., OMOTE, K. Visualization of internal 3D structure of small live seed on germination by laboratory-based X-ray microscopy with phase contrast computed tomography. PLANT METHODS, 2020, roč. 16, č. 7, s. 1-10. ISSN: 1746-4811.

• LIZAL, F; ELCNER, J; JEDELSKY, J; MALY, M; JICHA, M; FARKAS, A; BELKA, M; REHAK, Z; ADAM, J; BRINEK, A; LAZNOVSKY, J; ZIKMUND, T; KAISER, J. "The effect of oral and nasal breathing on the deposition of inhaled particles in upper and tracheobronchial airways." Journal of Aerosol Science (2020): 105649.

• NOVOTNÁ, M; ZIKMUNDOVA, E; PORIZKA, P; ZIKMUND, T; NOVOTNY, K; KAISER, J. "X-ray micro computed tomography-aided calibration of laser-induced breakdown spectroscopy depth profiling for archaeological ceramics examination." Spectrochimica Acta Part B: Atomic Spectroscopy (2020): 105965.

• MONTUFAR, EB; TKACHENKO, S; CASAS-LUNA, M; SKARVADA, P; SLAMECKA, K; DIAZ-DE-LA-TORRE, S; KOUTNY, D; PALOUSEK, D; KOLEDOVA, Z; HERNANDEZ-TAPIA, L; ZIKMUND, T; CELKO, L; KAISER, J. "Benchmarking of additive manufacturing technologies for commercial-pure-titanium bone-tissue-engineering scaffolds: processing-microstructure-property relationship." Additive Manufacturing (2020): 101516.

• ZIKMUNDOVÁ, E; ZIKMUND, T; SLADEK, V; KAISER, J. "Non-destructive lock-picking of a historical treasure chest by means of X-ray computed tomography." PloS one 15.7 (2020): e0235316.

• HAMPL, M; DUMKOVA, J; KAVKOVA, M; DOSEDELOVA, H; BRYJOVA, A; ZAHRADNICEK, O; PYSZKO, M; MACHOLAN, M; ZIKMUND, T; KAISER, J; BUCHTOVA, M. "Polarized Sonic hedgehog protein localization and a shift in the expression of region-specific molecules is associated with the secondary palate development in the veiled chameleon." Frontiers in Cell and Developmental Biology 8 (2020): 572.

• KALASOVÁ, D; ZIKMUND, T; SPURNÝ, P; HALODA, J; BOROVIČKA, J; KAISER, J. "Chemical and physical properties of Žďár nad Sázavou L chondrite and porosity differentiation using computed tomography." Meteoritics & Planetary Science (2020).

• COMAI, GE; TESAROVA, M; DUPE, V; RHINN, M; VALLECILLO-GARCIA, P; DA SILVA, F; FERET, B; EXELBY, K; DOLLE, P; CARLSSON, L; PRYCE, B; SPIZT, F; STRICKER, S; ZIKMUND, T; KAISER, J; BRISCOE, J; SCHEDL, A; GHYSELINCK, NB; SCHWEITZER, R; TAJBAKHSH, S. "Local retinoic acid signaling directs emergence of the extraocular muscle functional unit." PLoS biology 18.11 (2020): e3000902.

• VOCETKOVA, K; SOVKOVA, V; BUZGO, M; LUKASOVA, V; DIVIN, R; RAMPICHOVA, M; BLAZEK, P; ZIKMUND, T; KAISER, J; KARPISEK, Z; AMLER, E; FILOVA, E. "A Simple Drug Delivery System for Platelet-Derived Bioactive Molecules, to Improve Melanocyte Stimulation in Vitiligo Treatment." Nanomaterials 10.9 (2020): 1801.

• KALASOVÁ, D; BRINEK, A; SLOUF, M; DUSKOVA-SMRCKOVA, M; ZIKMUND, T; PATAKOVA, Z; KAISER, J. "Wide-cone angle phase-contrast X-ray computed tomography of synthetic polymer materials." IEEE Transactions on Instrumentation and Measurement (2020).

• VESPALEC, A; NOVAK, J; KOHOUTKOVA, A; VOSYNEK, P; PODROUZEK, J; SKAROUPKA, D; ZIKMUND, T; KAISER, J; PALOUSEK, D. "Interface Behavior and Interface Tensile Strength of a Hardened Concrete Mixture with a Coarse Aggregate for Additive Manufacturing" Special Issue "Concrete 3D Printing and Digitally-Aided Fabrication" (2020).

  ---

                                              2019​​

• ​SLÁDEK, V.; ČEREVKOVÁ, S.; ZIKMUND, T.; KAISER, J. Error in the estimation of periosteal and endosteal contours from micro‐CT scans for nonadult tibiae and humeri. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY. Wiley, Hoboken, USA, 2019. s. 275-294. ISSN: 0002-9483.

• TESAŘOVÁ, M.; HEUDE, E.; COMAI, G.; ZIKMUND, T.; KAUCKÁ, M.; ADAMEYKO, I.; TAJBAKHSH, S.; KAISER, J. An interactive and intuitive visualisation method for X-ray computed tomography data of biological samples in 3D Portable Document Format. Scientific Reports, 2019, roč. 2019, č. 9, s. 1-8. ISSN: 2045-2322.

• DU PLESSIS, A.; LE ROUX, S.; WALLER, J.; SPERLING, S.; ACHILLES, N.; BEERLINK, A.; MÉTAYER, J.; SINICO, M.; PROBST, G.; DEWULF, W.; BITTNER, F.; ENDRES, H.; WILLNER, M.; DRÉGELYI-KISS, Á.; ZIKMUND, T.; LÁZŇOVSKÝ, J.; KAISER, J.; PINTER, P.; DIETRICH, S.; LOPEZ, E.; FITZEK, O.; KONRAD, P. Laboratory X-ray tomography for metal additive manufacturing: Round robin test. Additive Manufacturing, 2019, roč. 30, č. 1, s. 1-15. ISSN: 2214-8604.

• KALOVÁ, K.; BOBEROVÁ, K.; PŘICHYSTALOVÁ, R.; NOVÁČEK, J.; JAROŠOVÁ, I.; ZIKMUND, T.; KAISER, J.; KYSELICOVÁ, K.; ŠEBEST, L.; BALDOVIČ, M.; FRTÚS, A.; SIKORA, M.; ALLENTOFT, M. Serious chronic disease of the cervical spine and trauma in a young female from the middle ages (Czech Republic). International Journal of Paleopathology, 2019, roč. 24, č. 1, s. 185-196. ISSN: 1879-9817.

• KOHOUTEK, J.; NOVÁKOVÁ, M.; VRÁBEL, D.; HAMPL, M.; PROCHÁZKA, J.; PETREZSELYOVA, S.; PROCHÁZKOVÁ, M.; SEDLÁČEK, R.; KAVKOVÁ, M.; ZIKMUND, T.; KAISER, J.; JUAN, H.; FANN, M.; BUCHTOVÁ, M. Mouse model of congenital heart defects, dysmorphic facial features and intellectual developmental disorders as a result of nonfunctional CDK13. Frontiers in Cell and Developmental Biology, 2019, roč. 7, č. 155, s. 1-19. ISSN: 2296-634X.

• ​ZIKMUND, T.; ŠALPLACHTA, J.; ZATOČILOVÁ, A.; BŘÍNEK, A.; PANTĚLEJEV, L.; ŠTĚPÁNEK, R.; KOUTNÝ, D.; PALOUŠEK, D.; KAISER, J. Computed tomography based procedure for reproducible porosity measurement of additive manufactured samples. NDT & E INTERNATIONAL, 2019, roč. 103, č. 1, s. 111-118. ISSN: 1879-1174.

• KALASOVÁ D.; ZIKMUND T., PÍNA L.; TAKEDA Y.; HORVÁTH M.; OMOTE K.; KAISER J. Characterization of a laboratory-based X-ray computed nanotomography system for propagation-based method of phase contrast imaging. IEEE Transactions on Instrumentation and Measurement. 2019.

• TESAŘOVÁ M.; ZIKMUND T.; KAUCKÁ M.; ADAMEYKO I.; KAISER J. Use of the industrial X-ray computed microtomography to address scientific questions in developmental biology. The e-Journal of Nondestructive Testing, 2019, roč. 24, č. 3, s. 1-9. ISSN: 1435-4934.

• POSPIECH, M.; ZIKMUND, T.; JAVŮRKOVÁ, Z.; KAISER, J.; TREMLOVÁ, B. An Innovative Detection of Mechanically Separated Meat in Meat Products. FOOD ANAL METHOD, 2019, roč. 1, č. 11, s. 1-6. ISSN: 1936-9751.

• ŠALPLACHTA, J.; ZIKMUND, T.; HORVÁTH, M., TAKEDA, Y., OMOTE, K., PÍNA, L., KAISER, J. CCD and scientific-CMOS detectors for submicron laboratory based X-ray Computed Tomography. The e-Journal of Nondestructive Testing, 2019, č. 2019, s. 1-8. ISSN: 1435-4934.

• VOJTOVÁ, L.; ZIKMUND, T.; PAVLIŇÁKOVÁ, V.; ŠALPLACHTA, J.; KALASOVÁ, D.; PROSECKÁ, E.; BRTNÍKOVÁ, J.; ŽÍDEK, J.; PAVLIŇÁK, D.; KAISER, J. The 3D imaging of mesenchymal stem cells on porous scaffolds using high-contrasted x-ray computed nanotomography. Journal of Microscopy, 2019, roč. 273, č. 3, s. 169-177. ISSN: 1365-2818.

• BLAŽEK, P.; ŠRÁMEK, J.; ZIKMUND, T.; KALASOVÁ, D.; HORTVÍK, V.; KLAPETEK, P.; KAISER, J. Voxel size and calibration for CT measurements with a small field of view. The e-Journal of Nondestructive Testing, 2019, č. 2019, s. 1-7. ISSN: 1435-4934.

• KASTRITI, MARIA ELENI, ET AL. "Ablation of CNTN2+ pyramidal neurons during development results in defects in neocortical size and axonal tract formation." Frontiers in Cellular Neuroscience 13 (2019): 454.

• LANDOVA SULCOVA, MARIE, ET AL. "Developmental mechanisms driving complex tooth shape in reptiles." Developmental Dynamics 249.4 (2020): 441-464.

2018

• HEUDE, E.; TESAŘOVÁ, M.; SEFTON, E. M.; JULLIAN, E.; ADACHI, N.; GRIMALDI, A.; ZIKMUND, T.; KAISER, J.; KARDON, G.; KELLY, R. G.; TAJBAKHSH, S. Unique morphogenetic signatures define mammalian neck muscles and associated connective tissues. eLife, 2018, č. 7, s. 1-75. ISSN: 2050-084X.

• HANKEOVÁ, S.; ZIKMUND, T.; KAVKOVÁ, M.; BŘÍNEK, A.; LENDAHL, U.; KAISER, J.; BRYJA, V.; ANDERSSON, E. Double resin casting micro computed tomography (DUCT) of biliary and vascular system. JOURNAL OF HEPATOLOGY. 2018. s. S414 (S415 s.)ISSN: 0168-8278.

• SLÁDEK, V.; SABOLOVÁ, V.; ŠEBESTA, O.; ZIKMUND, T.; KAISER, J.; ČEREVKOVÁ, S. Effect of deriving periosteal and endosteal contours from microCT scans on computation of cross-sectional properties in non-adults: the femur. Journal of Anatomy, 2018, roč. 233, č. 3, s. 1-13. ISSN: 1469-7580.

• ŠŤASTNÝ, P.; CHLUP, Z.; KALASOVÁ, D.; ZIKMUND, T.; KAISER, J.; TRUNEC, M. Epoxy-based gelcasting of machinable hydroxyapatite foams for medical applications. Journal of the American Ceramic Society, 2018, roč. 101, č. 8, s. 3317-3327. ISSN: 0002-7820.

• ROČŇÁKOVÁ, I.; SLÁMEČKA, K.; MONTUFAR JIMENEZ, E.; REMEŠOVÁ, M.; DYČKOVÁ, L.; BŘÍNEK, A.; JECH, D.; DVOŘÁK, K.; ČELKO, L.; KAISER, J. Deposition of Hydroxyapatite and Tticalcium Phosphate Coatings by Suspension Plasma Spraying: Effects of Torch Speed. Journal of the European Ceramic Society, 2018, č. 38, s. 5489-5496. ISSN: 0955-2219.

• KALASOVÁ, D.; PAVLIŇÁKOVÁ, V.; ZIKMUND, T.; VOJTOVÁ, L.; KAISER, J. Correlation of X-ray Computed Nanotomography and Scanning Electron Microscopy Imaging of Collagen Scaffolds. MICROSCOPY AND MICROANALYSIS, 2018, roč. 24, č. S2, s. 102-103. ISSN: 1431-9276.

• TESAŘOVÁ M., MANCINI L., SIMON A., ADAMEYKO I., KAUCKÁ M., ELEWA A., LANZAFAME G., ZHANG Y., KALASOVÁ D., SZAROWSKÁ B., ZIKMUND T., NOVOTNÁ M., KAISER J. A quantitative analysis of 3D-cell distribution in regenerating muscle-skeletal system with synchrotron X-ray computed microtomography. Scientific Reports, 2018, roč. 14145, č. 8, s. 1-13. ISSN: 2045-2322.

• POSPIECH, M.; ZIKMUND, T.; JAVŮRKOVÁ, Z.; KAISER, J.; TREMLOVÁ, B. An Innovative Detection of Mechanically Separated Meat in Meat Products. FOOD ANAL METHOD, 2018, roč. 1, č. 11, s. 1-6. ISSN: 1936-9751.

• KALASOVÁ, D.; DVOŘÁK, K.; SLOBODNÍK, M.; VŠIANSKÝ, D.; ZIKMUND, T.; DLUHOŠ, J.; VÁŇA, R.; BUREŠ, J.; KAISER, J. Characterization of inner structure of limestone by X-ray computed sub-micron tomography. CONSTRUCTION AND BUILDING MATERIALS, 2018, roč. 174, č. 1, s. 693-700. ISSN: 1879-0526.

• BŘÍNEK, A.; LÁZŇOVSKÝ, J.; LÍZAL, F.; REHÁK, Z.; ZIKMUND, T.; JEDELSNKÝ, J.; KAISER, J. Evaluation of aerosol deposition in a realistic human airway model by X-ray computed tomography/positron emission tomography. The e- Journal of Nondestructive Testing, 2018. ISSN: 1435-4934.

• ZIKMUND, T.; NOVOTNÁ, M.; KAVKOVÁ, M.; TESAŘOVÁ, M.; KAUCKÁ, M.; SZAROWSKÁ, B.; ADAMEYKO, I.; HRUBÁ, E.; BUCHTOVÁ, M.; DRAŽANOVÁ, E.; STARČUK, Z.; KAISER, J. High-contrast differentiation resolution 3D imaging of rodent brain by X-ray computed microtomography. Journal of Instrumentation, 2018, roč. 13, č. 2, s. 1-12. ISSN: 1748-0221.

• SEDLAČÍK, T., O. K. ACAR, H. STUDENOVSKÁ, et al. Chondrogenic potential of macroporous biodegradable cryogels based on synthetic poly(α-amino acids). Soft Matter. 2018, 14(2), 228-238. DOI: 10.1039/C7SM02074K. ISSN 1744-683X.

• MARCIÁN, P.; WOLFF, J.; HORÁČKOVÁ, L.; KAISER, J.; ZIKMUND, T.; BORÁK, L. Micro finite element analysis of dental implants under different loading conditions. COMPUTERS IN BIOLOGY AND MEDICINE, 2018, č. 96, s. 157-165. ISSN: 0010-4825.

• CELÁ, PETRA, ET AL. "Ciliopathy protein Tmem107 plays multiple roles in craniofacial development." Journal of dental research 97.1 (2018): 108-117.

• PROCHAZKA, DAVID, ET AL. "Joint utilization of double-pulse laser-induced breakdown spectroscopy and X-ray computed tomography for volumetric information of geological samples." Journal of Analytical Atomic Spectrometry 33.11 (2018): 1993-1999.

2017

• PAVLIŇÁKOVÁ, V.; VOJTOVÁ, L.; ŠALPLACHTA, J.; ZIKMUND, T.; PROSECKÁ, E.; ŽÍDEK, J.; KAISER, J. 3D imaging of biopolymeric scaffolds seeded with cells using x-ray computed nano- tomography. Czech Chemical Society Symposium Series. Czech chemical society symposium series. Praha: Czech Chemical Society Symposium Series, 2017. s. 37-38. ISSN: 2336-7202.

• KALASOVÁ, D.; ZIKMUND, T.; ŠŤASTNÝ, P.; TRUNEC, M.; KAISER, J. Determination of porosity from tomographic data of hydroxyapatite scaffold- like structures. Czech chemical society symposium series. Praha: Czech chemical society, 2017. s. 12-13. ISSN: 2336-7202.

• ŠŤASTNÝ, P.; TRUNEC, M.; KALASOVÁ, D.; CHLUP, Z.; ZIKMUND, T. Machinable porous hydroxyapatite scaffolds prepared by, gel- casting method using an epoxide as a gelling agent. CEITEC PHD RETREAT II. První. Published by Masaryk University, Brno, Czech, Republic: 2017. s. 108-108. ISBN: 9778-80-210-8550- 3.

• PALOUŠEK, D.; PANTĚLEJEV, L.; ZIKMUND, T.; KOUTNÝ, D. PROCESSING OF NEARLY PURE IRON USING 400W SELECTIVE LASER MELTING – INITIAL STUDY. MM Science Journal, 2017, roč. 2017, č. 1, s. 1-6. ISSN: 1803-1269.

• KALASOVÁ, D.; ZIKMUND, T.; KAISER, J. Computed tomography for inspection of inner structure of materials. In CEITEC PhD retreat II, Telč 20-21 April 2017 – Book of abstracts. 2017. s. 79-79. ISBN: 978-80-210-8550- 3.

• KAUCKÁ, M.; ZIKMUND, T.; TESAŘOVÁ, M.; GYLLBORG, D.; HELLANDER, A.; JAROŠ, J.; KAISER, J.; PETERSEN, J.; SZAROWSKA, B.; NEWTON, P.T.; DYACHUK, V.; LI, L.; QIAN, H.; JOHANSSON, A-S.; MISHINA, Y.; CURRIE, J.; TANAKA, E.M.; ERICKSON, A.; DUDLEY, A.; BRISMAR, H.; SOUTHAM, P.; COEN, E.; CHEN, M.; WEINSTEIN, L.S.; HAMPL, A.; ARENAS, E.; CHAGIN, A.S.; FRIED, K.; ADAMEYKO, I. Oriented clonal cell dynamics enables accurate growth and shaping of vertebrate cartilage. eLife, 2017, roč. 6, č. 4, s. 1-82. ISSN: 2050-084X.

• NEUMANNOVÁ Klára, PETŘÍK Jan, VOSTROVSKÁ Ivana, DVOŘÁK Jindřich, ZIKMUND Tomáš, KAISER Jozef. Variability in coiling technique in LBK pottery inferred by experiments and pore structure micro- tomography analysis. Archeologické rozhledy, 2017, roč. 69, č. 1, s. 1-15. ISSN: 0323-1267.

• KALASOVÁ, D.; MAŠEK, J.; ZIKMUND, T.; SPURNÝ, P.; HALODA, J.; BURGET, R.; KAISER, J. Segmentation of multi- phase object applying trainable segmentation. The e- Journal of Nondestructive Testing, 2017, č. 2017, s. 1-6. ISSN: 1435-4934.

• Li, L., Newton, P. T., Bouderlique, T., Sejnohova, M., Zikmund, T., Kozhemyakina, E., Xie, M., Krivanek, J., Kaiser, J., Qian, H., Dyachuk, V., Lassar, A. B., Warman, M. L., Barenius, B., Adameyko, I., Chagin, A. S. Superficial cells are self-renewing chondrocyte progenitors, which form the articular cartilage in juvenile mice. The FASEB Journal, 2017, roč. 31, č. 3, s. 1067-1084. ISSN: 0892-6638.

• LOJDA, V.; ZIKMUND, T.; SOJKA, K.; KAISER, J.; PROŠEK, Z.; LIDMILA, M. Microstructural Analysis of Fly Ash- Based Stabilizer for Track Bed. In Contemporary Materials and Technologies in Civil Engineering. Key Engineering Materials Vol. 731. 2017. s. 66-73. ISBN: 978-3-0357-1138- 7.

• HORYNOVÁ, M.; CASAS LUNA, M.; MONTUFAR JIMENEZ, E.; DÍAZ DE LA TORRE, S.; ČELKO, L.; KLAKURKOVÁ, L.; DIÉGUEZ-TREJO, G.; DVOŘÁK, K.; ZIKMUND, T.; KAISER, J. Fracture Mechanism of Interpenetrating Iron- Tricalcium Phosphate Composite. In Materials Structure & Micromechanics of Fracture VIII. Solid State Phenomena. Solid State Phenomena. Switzerland: Trans Tech Publications, 2017. s. 333-336. ISBN: 978-3-03835-626- 4. ISSN: 1012-0394.

• VYMAZALOVA, K.; VARGOVA, L.; ZIKMUND, T.; KAISER, J. The possibilities of studying human embryos and foetuses using micro-CT: a technical note. Anatomical Science International, 2017, roč. 92, č. 2, s. 299-303. ISSN: 1447-073X.

• KOUTECKÝ, T.; ZIKMUND, T.; GLITTOVÁ, D.; PALOUŠEK, D.; ŽIVČÁK, J.; KAISER, J. X-ray micro- CT measurement of large parts at very low temperature. Review of Scientific Instruments, 2017, roč. 88, č. 3, s. 033707- 1 (033707-6 s.)ISSN: 0034-6748.

2016

• MONTUFAR JIMENEZ, E.; HORYNOVÁ, M.; CASAS LUNA, M.; DIAZ-DE-LA-TORRE, S.; ČELKO, L.; KLAKURKOVÁ, L.; SPOTZ, Z.; DIÉGUEZ-TREJO, G.; FOHLEROVÁ, Z.; DVOŘÁK, K.; ZIKMUND, T.; KAISER, J. Spark plasma sintering of load-bearing iron-carbon nanotube- tricalcium phosphate CerMets for orthopaedic applications. JOM, 2016, roč. 68, č. 4, s. 1134-1142. ISSN: 1047-4838.

• TESAŘOVÁ, M.; ZIKMUND, T.; KAUCKÁ, M.; ADAMEYKO, I.; JAROŠ, J.; PALOUŠEK, D.; ŠKAROUPKA, D.; KAISER, J. Use of micro computed- tomography and 3D printing for reverse engineering of mouse embryo nasal capsule. Journal of Instrumentation, 2016, roč. 11, č. 3, s. 1-11. ISSN: 1748-0221.

• KAISER, J.; ZIKMUND, T. The Dolní Věstonice Studies, Volume 21/ 2016. In The Dolní Věstonice Studies, Volume 21/ 2016. Brno: Academy of Sciences of the Czech Republic, Institute of Archeology, 2016. s. 372-376. ISBN: 978-80-7524-004- 0.

• ŽÍDEK, J.; VOJTOVÁ, L.; ABDEL-MOHSEN, A.; CHMELÍK, J.; ZIKMUND, T.; BRTNÍKOVÁ, J.; JAKUBÍČEK, R.; ZUBAL, L.; JAN, J.; KAISER, J. Accurate micro-computed tomography imaging of pore spaces in collagen-based scaffold. Journal of Materials Science: Materials in Medicine, 2016, roč. 27, č. 6, s. 1-18. ISSN: 0957-4530.

• KALASOVÁ, D.; ZIKMUND, T.; JAROŠ, J.; TESAŘOVÁ, M.; KAUCKÁ, M.; ADAMEYKO, I.; PALOUŠEK, D.; ŠKAROUPKA, D.; KAISER, J. Industrial Tomography System for Answering Biological Issues: Development of the, Mouse Embryo Face. In 6th Conference on Industrial Computed Tomography (ICT) 2016. The e- Journal of Nondestructive Testing. iCT 2016, 2016. s. 1-9. ISSN: 1435-4934.

• M. Kaucka, E. Ivashkin, D. Gyllborg, T. Zikmund, M. Tesarova, J. Kaiser, M. Xie, J. Petersen, V. Pachnis, S.K. Nicolis, T. Yu, P. Sharpe, E. Arenas, H. Brismar, H. Blom, H. Clevers, U. Suter, A.S. Chagin, K. Fried, A. Hellander, I. Adameyko. Analysis of neural crest- derived clones reveals novel aspects of facial development. Science Advances, 2016, roč. 2, č. 8, s. 1-16. ISSN: 2375-2548.

• ROČŇÁKOVÁ, I.; MONTUFAR JIMENEZ, E.; HORYNOVÁ, M.; ZIKMUND, T.; NOVOTNÝ, K.; KLAKURKOVÁ, L.; ČELKO, L.; SONG, G-L; KAISER, J. Assessment of localized corrosion under simulated physiological conditions of magnesium samples with heterogeneous microstructure: value of X-ray computed micro- tomography platform. CORROSION SCIENCE, 2016, roč. 104, č. 3, s. 187-196. ISSN: 0010-938X.

• JEKL, VLADIMIR, TOMAS ZIKMUND AND KAREL HAUPTMAN. "Dyspnea in a degu (Octodon degu) associated with maxillary cheek teeth elongation." Journal of Exotic Pet Medicine 25.2 (2016): 128-132.

2015

• ROČEK, Z.; BOISTEL, R.; LENOIR, N.; MAZURIER, A.; PIERCE, S.; RAGE, J.; SMIRNOV, S.; SCHWERMANN, A.; VALENTIN, X.; VENCZEL, M.; WUTTKE, M.; ZIKMUND, T. Frontoparietal Bone in Extinct Palaeobatrachidae (Anura): Its Variation and Taxonomic Value. Anatomical Record, 2015, vol. 298, no. 11, p. 1848-1863. ISSN: 1932- 8494.

• KOUKAL, O.; KOUTNÝ, D.; PALOUŠEK, D.; VRÁNA, R.; ZIKMUND, T.; PANTĚLEJEV, L. Research about the Influence of Process Parameters of Selective Laser Melting on Material EN AW 2618. In Euro PM2015 Proceedings. Reims, France: 2015. p. 1-6. ISBN: 978-1-899072-47- 7.

• KOUTNÝ, D.; PALOUŠEK, D.; KOUKAL, O.; ZIKMUND, T.; PANTĚLEJEV, L.; DOKOUPIL, F. Processing of High Strength Al-Cu alloy Using 400W Selective Laser Melting – Initial Study. In Lasers in Manufacturing 2015 Proceedings. Bochum: German Scientific Laser Society, 2015. p. 1-11.

• SVOBODA, J.; HLADILOVÁ, Š.; HORÁČEK, I.; KAISER, J.; KRÁLÍK, M.; NOVÁK, J.; NOVÁK, M.; POKORNÝ, P.; SÁZELOVÁ, S.; SMOLÍKOVÁ, L.; ZIKMUND, T. Dolní Věstonice IIa: Gravettian microstratigraphy, environment, and the origin of baked clay production in Moravia. QUATERNARY INTERNATIONAL, 2015, vol. 359- 360, no. 1, p. 195-210. ISSN: 1040- 6182.

• VRÁNA, R.; KOUTNÝ, D.; PALOUŠEK, D.; ZIKMUND, T. Impact Resistance of Lattice Structure Made By Selective Laser Melting From Alsi12 Alloy. MM Science Journal, 2015, vol. 2015, no. 4, p. 852-855. ISSN: 1805- 0476.

• MINARIKOVA A., Fictum P., ZIKMUND T., JEKL V. "Dental disease and periodontitis in a guinea pig (Cavia porcellus)." Journal of Exotic Pet Medicine 25.2 (2016): 150-156.

• JEKL V., ZIKMUND T., HAUPTMAN K. 2016 Dyspnea in a degu (Octodon degu) associated with maxillary cheek teeth elongation. Journal of Exotic Pet Medicine, accepted

2014

• HOBST, L.; BÍLEK, P.; ANTON, O.; ZIKMUND, T. Sledování nepravidelného rozmístění drátků v kalibračních vzorcích drátkobetonu počítačovou tomografií (CT). Materiály pro stavbu, 2014, vol. 2014, no. 5, p. 63-65. ISSN: 1213- 0311.

• VOJTOVÁ, L.; ŽÍDEK, J.; ZUBAL, L.; BRTNÍKOVÁ, J.; ABDEL-LATTIF, A.; ZIKMUND, T.; PROSECKÁ, E.; RAMPICHOVÁ, M.; CHMELÍK, J.; JAKUBÍČEK, R.; JAN, J.; KAISER, J. Studium morfologie biopolymerních skafoldů pomocí rentgenové počítačové mikro- tomografie. In Programová brožura konference: VIII. česko- slovenská konference Polymery. 1. Praha: ÚMCH AVČR, 2014. p. 23-25. ISBN: 978-80-85009-81- 1.

• ZIKMUND, T.; BRADA, M.; ZATOČILOVÁ, A.; PETRILAK, M.; KAISER, J. Kontrola rozměrů redukce objektivu a kamery pomocí rentgenové počítačové tomografie. Jemná mechanika a optika, 2014, vol. 59, no. 6- 7, p. 186-189. ISSN: 0447- 6441.

• BÍLEK, P.; HOBST, L.; ZIKMUND, T. Využití počítačové tomografie pro kontrolu homogenity drátkobetonu. In Sborník příspěvků ExFoS – Expert Forensic Science XXIII. mezinárodní vědecká konference soudního inženýrství. ExFoS. Brno, Česká republika: 2014. p. 37-44. ISBN: 978-80-214-4852- 0.

• FRIML, J.; PROCHÁZKOVÁ, K.; MELNYK, G.; ZIKMUND, T.; KAISER, J. Investigation of Cheb relief intarsia and the study of the technological process of its production by micro computed tomography. Journal of cultural heritage, 2014, vol. 15, no. 6, p. 609-613. ISSN: 1296- 2074.

2013

• ZIKMUND, T.; PETRILAK, M.; NOVOTNÝ, J.; LIŠKA, M.; KAISER, J. Kontrola rozměrů koncovky optického vlákna pomocí počítačové tomografie. Jemná mechanika a optika, 2013, vol. 2013, no. 6, p. 181-183. ISSN: 0447- 6441.